PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g11840.1
Common NameLR48_Vigan02g176500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 200aa    MW: 22489.4 Da    PI: 8.4965
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g11840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.91.9e-311872459
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                    +rY eClkNhAas+Gg+a+DGCgEf+++ geegt +al+C+AC+CHRnFHR+e e+
  Vang06g11840.1 18 IRYTECLKNHAASIGGNATDGCGEFIAD-GEEGTLEALRCSACNCHRNFHRKEIES 72
                    79*************************8.999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.8E-291870IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.9E-291970IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-202071IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.2232069IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.2E-28122193IPR009057Homeodomain-like
SuperFamilySSF466891.0E-17126193IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-26132189IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MESSNLHADR RADRKIIIRY TECLKNHAAS IGGNATDGCG EFIADGEEGT LEALRCSACN  60
CHRNFHRKEI ESSDSYITPL MIIPDTTQIG PILAQLSPHK SGSISPSDVS DEKDCENGMT  120
KEVGNNATEK VKKRFRTKFT QEQKEKMFLF AERAGWRIQK LDESVVQNFC QEIGIKRRVL  180
KVWIHNNKNT FAKRNPSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-241331901875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511858.11e-140PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647224e-62ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A0L9TYJ61e-149A0A0L9TYJ6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQ031e-149A0A0S3SQ03_PHAAN; Uncharacterized protein
STRINGGLYMA20G35690.21e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-60homeobox protein 21
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]